Stem-loop pta-MIR398

Accession

MI0005789

Description

Pinus taeda pta-MIR398 precursor miRNA

Gene family

MIPF0000107; MIR398

Sequence

agcagaggagguuuccaccggggcgaccugggaacacgucuacauuaauguaaucucuugauuucuccaugaguccugugaaugugaaUGUGUUCCAAGGUCACCCCAGucgagccuacucucu
((.((((.((((((..((.((((.(((((.(((((((((.((((((........(((.((.......)).))).......)))))).))))))))).))))).)))).)).)))))).))))))

Structure

  c    g      cc  c    c     g         c      aauguaau   u  au 
ag agag agguuu  ac gggg gaccu ggaacacgu uacauu        cuc ug  u
|| |||| ||||||  || |||| ||||| ||||||||| ||||||        ||| ||  u
uc ucuc uccgag  uG CCCC CUGGA CCUUGUGUa guguaa        gag ac  c
  -    a      -c  A    A     A         a      -guguccu   u  cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR398

• Accession: MIMAT0005000
• Description: Pinus taeda pta-miR398 mature miRNA
• Sequence: 89 - UGUGUUCCAAGGUCACCCCAG - 109
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098