miRBase entry: ame-mir-275

Stem-loop ame-mir-275


Accession
MI0005733
Description
Apis mellifera ame-mir-275 precursor miRNA
Gene family
MIPF0000187; mir-275

Literature search
2 open access papers mention ame-mir-275
(3 sentences)

Sequence

aaacguuacuugucgugcgcaacgcgcguuacucggguacuuuaggcugugccaauuucgaaucagUCAGGUACCUGAAGUAGCGCGCGcugcggcgaaa
............((((.((((.((((((((((((((((((((..(((((..............)))))))))))))).))))))))))).))))))))..

Structure
aaacguuacuug    g    a           -         ua     ugccaa 
            ucgu cgca cgcgcguuacu cggguacuu  ggcug      u
            |||| |||| ||||||||||| |||||||||  |||||       
            agcg gcgu GCGCGCGAUGA GUCCAUGGA  CUgac      u
----------aa    -    c           A         --     uaagcu 


Annotation confidence Not enough data
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Genome context
CM000060.5: 10532636-10532735 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ame-mir-275
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-275-3p

Accession MIMAT0004424
Description Apis mellifera ame-miR-275-3p mature miRNA
Sequence 67 - UCAGGUACCUGAAGUAGCGCGCG - 89
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670