miRBase entry: ame-let-7

Stem-loop ame-let-7


Accession
MI0005726
Description
Apis mellifera ame-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
7 open access papers mention ame-let-7
(25 sentences)

Sequence

acgaugccugggUGAGGUAGUAGGUUGUAUAGUagggaauggaaauucgcgauauacgaaguccacuguacaacuugcuaacuuucccggucgucgacgc
.(((((.(((((.(((.((((((((((((((((.......(((..((((.......)))).))))))))))))))))))).))).))))).)))))....

Structure
---a     c     U   G                agggaau   aa    cg 
    cgaug cuggg GAG UAGUAGGUUGUAUAGU       gga  uucg  a
    ||||| ||||| ||| ||||||||||||||||       |||  ||||  u
    gcugc ggccc uuc aucguucaacauguca       ccu  aagc  a
cgca     u     u   a                -------   -g    au 


Annotation confidence Not enough data
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Genome context
CM000061.5: 8436647-8436746 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-let-7-5p

Accession MIMAT0004418
Description Apis mellifera ame-let-7-5p mature miRNA
Sequence 13 - UGAGGUAGUAGGUUGUAUAGU - 33
Evidence experimental
array [1], RTPCR [2], Illumina [3]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 20491979
    Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee
    "Behura SK, Whitfield CW"
    "Insect Mol Biol (2010) 19:431-439