miRBase entry: ppt-MIR156b

Stem-loop ppt-MIR156b


Accession
MI0005696
Description
Physcomitrella patens ppt-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention ppt-MIR156b
(10 sentences)

Sequence

gugaggcucgagugcagacacuauucaagugugggcggggggagcgggagUGACAGAAGAGAGUGAGCACgguugcgccuguacgaggauaacguacuugcucaagugugcucacucucuucaugucgcgccucucccucgucguugugacgucauuugugaugagaggguggggaggggggugugugagggaggaggaggggaggugaaggguguggug
.....((((...(((..(((((.....)))))..)))....))))....((((((((((((((((((((((.(((.((..(((((.......)))))..)).))).)))))))))))))))).))))))(((((.(((((.((.((.(.(((.(((((.(.................).))))))))..).)).)).)))))))))).............

Structure
------------------------------------------gugaggcucgagugcagacacuauucaagugugggcggggggagcggga      -                g   c  cu     ag 
                                                                                           gUGACA GAAGAGAGUGAGCACg uug gc  guacg  g
                                                                                           |||||| |||||||||||||||| ||| ||  |||||  a
                                                                                           cgcugu cuucucucacucgugu aac cg  caugc  u
guggugugggaaguggaggggaggaggagggaguguguggggggaggggugggagaguaguguuuacugcaguguugcugcucccucuccg      a                g   u  uu     aa 


Annotation confidence Not enough data
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Genome context
Chr21: 9338002-9338221 [-]

Database links

Mature ppt-miR156b

Accession MIMAT0004384
Description Physcomitrella patens ppt-miR156b mature miRNA
Sequence 51 - UGACAGAAGAGAGUGAGCAC - 70
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769