miRBase entry: ppt-MIR898b

Stem-loop ppt-MIR898b


Accession
MI0005694
Description
Physcomitrella patens ppt-MIR898b precursor miRNA
Gene family
MIPF0000378; MIR898


Sequence

uacugcagaacuuaguuacagauucaucugcuuuguucauuuccggcaucUUGCUGUGCACUACUUAGUACgcgcguaguugcaggcauuccgggugcagcaacugacgcggaagacuuuucccagagugugcgcuucaacuggcgugcugaguagugcacagcaauaugcugggcauggacagcuaccaccgcugaguucgcuguauagaacguuugcu
(((.((.(((((((((..((((....))))..((((((((.((((((((.(((((((((((((((((((((((((((((((((..(((((...))))).)))))).))))((((.....))))((((((....)))....)))))))))))))))))))))))))).)))))))).))))))))........))))))))))).))).............

Structure
-------------   u  a         uacagauucaucugcu        u        c                       ---------------------------------    -      ag     c 
             uac gc gaacuuagu                uuguucau uccggcau UUGCUGUGCACUACUUAGUACgc                                 gcgu aguugc  gcauu  
             ||| || |||||||||                |||||||| |||||||| |||||||||||||||||||||||                                 |||| ||||||  ||||| c
             aug cg cuugagucg                gacaggua gggucgua aacgacacgugaugagucgugcg                                 cgca ucaacg  cgugg  
ucguuugcaagau   u  -         --------ccaccauc        c        u                       gucaacuucgcgugugagacccuuuucagaagg    g      -a     g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Chr14: 2423834-2424053 [+]

Database links

Mature ppt-miR898b

Accession MIMAT0004381
Description Physcomitrella patens ppt-miR898b mature miRNA
Sequence 51 - UUGCUGUGCACUACUUAGUAC - 71
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769