miRBase entry: ppt-MIR536b

Stem-loop ppt-MIR536b


Accession
MI0005691
Description
Physcomitrella patens ppt-MIR536b precursor miRNA
Gene family
MIPF0000398; MIR536

Literature search
2 open access papers mention ppt-MIR536b
(16 sentences)

Sequence

gucggcaguuuucguauuucgccgacuucggugacugcagaaagucgaaacaguagagagccuguugaauugcagcgguagacuugucuggcaucauuugguagucgucaaacuuauucuccccgaguuguagcggaaugauaccagaaaUUCGUGCCAAGCUGUGUGCAACcaagggguuuguuacuuaagauccacaugggaggagcgucccuaccagca
.(((((...(((((((..((((((....)))))).))).)))))))))...(((((.((((((.(((...((((((((((......(((((.(((((((.(((.(((................))).)....)).))))))).)))))......))))..))))))......))).)))))).)))))...........(((.(((......))).)))...

Structure
gucggcaguuuucguauuucgccgacuucggugacugcagaaagucgaaac     a      g   ---aau      --    gacuug     c       g  ---- g   ucaaacu 
                                                   aguag gagccu uug      ugcagc  ggua      ucugg aucauuu gu    a ucg       u
                                                   ||||| |||||| |||      ||||||  ||||      ||||| ||||||| ||    | |||        
                                                   ucauu uuuggg aac      GUGUCG  CCGU      agacc uaguaag cg    u agc       a
-----------------acgaccaucccugcgaggaggguacaccuagaau     g      g   CAACGU      AA    GCUUaa     a       g  augu g   cccucuu 


Annotation confidence Not enough data
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Genome context
Chr23: 2550169-2550390 [-]

Database links

Mature ppt-miR536b

Accession MIMAT0004378
Description Physcomitrella patens ppt-miR536b mature miRNA
Sequence 151 - UUCGUGCCAAGCUGUGUGCAAC - 172
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769