miRBase entry: ppt-MIR902b

Stem-loop ppt-MIR902b


Accession
MI0005686
Description
Physcomitrella patens ppt-MIR902b precursor miRNA
Gene family
MIPF0000376; MIR902

Literature search
2 open access papers mention ppt-MIR902b
(2 sentences)

Sequence

gguugugauaaaucgguuccgugucgucauaaucgcaaguguugcaggcaguuaugaggagauggagagcgugcagacuuguuuccuuccucuagccUAUGAUGCAGAUUCUUCAUCUguuuguuaucguucucaugguguacauaacagACGAAGGUCUGCAUCAUAGCcaagaggaagcaaaucuuaauaccuggcucgaauuuggccugcacgcaauuuu
((((......))))..((((((.((.(((((((.((..((...))..)).))))))).)).)))))).(((((((.....((((.((((((((.(.(((((((((((((.((((.(((((((((((((((....)))))).))).)))))).))))))))))))))))).).)))))))).))))..........((((.......)))))))))))......

Structure
gguugugauaaaucgguuccgugucgucauaaucgcaaguguugcaggcaguuaugaggagauggaga       --------------------gacuu    c        a c             U    A      -   -      u 
                                                                    gcgugca                         guuu cuuccucu g cUAUGAUGCAGAU CUUC UCUguu ugu uaucgu c
                                                                    |||||||                         |||| |||||||| | ||||||||||||| |||| |||||| ||| ||||||  
                                                                    cgcacgu                         uaaa gaaggaga c GAUACUACGUCUG GAAG Agacaa aca guggua u
--------------------------------------------------------------uuuuaa       ccgguuuaagcucgguccauaauuc    c        a C             -    C      u   u      c 


Annotation confidence Not enough data
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Genome context
Chr07: 11978379-11978601 [+]

Database links

Mature ppt-miR902b-5p

Accession MIMAT0004963
Description Physcomitrella patens ppt-miR902b-5p mature miRNA
Sequence 98 - UAUGAUGCAGAUUCUUCAUCU - 118
Evidence experimental
454 [2]

Mature ppt-miR902b-3p

Accession MIMAT0004373
Description Physcomitrella patens ppt-miR902b-3p mature miRNA
Sequence 151 - ACGAAGGUCUGCAUCAUAGC - 170
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769