Stem-loop ppt-MIR902a

Accession

MI0005685

Description

Physcomitrella patens ppt-MIR902a precursor miRNA

Gene family

MIPF0000376; MIR902

Literature search

2 open access papers mention ppt-MIR902a
(2 sentences)

Sequence

gcucgugacccucugaagggaacuuuggccugagaagagcgugggauuguaggaacaugaguggaucuacagcauuugagauuauucauuugcauccgcuacgaUAUGAUGCAGAUUCUUCAccugugugauacucuugagguauaacagACGAAGGUCUGCAUCAUAGCcaagcgaacguaaaucuggugcauucaacacuagaugcuuaauugaggugcau
....((..((((....)))).))....((((.((..((((.......((((((..((....))..))))))(((..(((......)))..)))...((((....((((((((((((.((((..((((...(((((.....))))).))))..))))))))))))))))....)))).......((((((((.......))))))))))))..)).))))....

Structure

gcucgugacccucugaagggaacuuug    g  aa    gugggauuguaggaacaugaguggaucuacagcauuugagauuauucauuugcauc    acga            U    Ac    gug     c 
                           gccu ag  gagc                                                        cgcu    UAUGAUGCAGAU CUUC  cugu   auacu u
                           |||| ||  ||||                                                        ||||    |||||||||||| ||||  ||||   ||||| u
                           ugga uu  uucg                                                        gcga    AUACUACGUCUG GAAG  gaca   uaugg g
-----------------------uacg    g  aa    --------------------------uagaucacaacuuacguggucuaaaugcaa    acCG            -    CA    --a     a 

Annotation confidence Not enough data

Genome context

Chr01: 4392280-4392502 [+]

Mature ppt-miR902a-5p

• Accession: MIMAT0004962
• Description: Physcomitrella patens ppt-miR902a-5p mature miRNA
• Sequence: 105 - UAUGAUGCAGAUUCUUCA - 122
• Evidence: experimental ; 454 [2]

Mature ppt-miR902a-3p

• Accession: MIMAT0004372
• Description: Physcomitrella patens ppt-miR902a-3p mature miRNA
• Sequence: 151 - ACGAAGGUCUGCAUCAUAGC - 170
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769