Stem-loop ppt-MIR893

Accession

MI0005676

Description

Physcomitrella patens ppt-MIR893 precursor miRNA

Sequence

cucugcauugcucucaaaccuccucccucuuccuuguccuagcauagaucccagucccuucuuccuugucuugaugcacgacccaauccucuccucuucuucuuuaucccgucauacccauacuaagacaagaaagaguuggaagagagaAUUGGGACUUGUGCUGGGACaaggaagaaaggaacuacuacuugcaccaagacaaggaaaaggaggagga
..................((((((((...(((((((((...(((.((.......(((.((((((((((((((...((((((((((((..((((.((((((.((((.((..(((.............)))..)).))))..))))))))))))))))..)))))).)))))))))))))).))).......))))).....)))))))))..)))))))).

Structure

cucugcauugcucucaaa        cuc         --cua   u  aucccag   c              gau      --      cc    c      -u    a  cc   auacc 
                  ccuccucc   uuccuuguc     gca ag       ucc uucuuccuugucuu   gcacga  cccaau  ucuc ucuucu  cuuu uc  guc     c
                  ||||||||   |||||||||     ||| ||       ||| ||||||||||||||   ||||||  ||||||  |||| ||||||  |||| ||  |||     a
                  ggaggagg   aaggaacag     cgu uc       agg aagaaggaaCAGGG   CGUGUU  GGGUUA  agag agaagg  gaga ag  cag     u
-----------------a        -aa         aacca   -  aucauca   a              --U      CA      --    -      uu    a  aa   aauca 

Annotation confidence Not enough data

Genome context

Chr10: 9627629-9627848 [-]

Mature ppt-miR893

• Accession: MIMAT0004364
• Description: Physcomitrella patens ppt-miR893 mature miRNA
• Sequence: 151 - AUUGGGACUUGUGCUGGGAC - 170
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13