Stem-loop ppt-MIR534b

Accession

MI0005675

Description

Physcomitrella patens ppt-MIR534b precursor miRNA

Gene family

MIPF0000377; MIR534

Literature search

1 open access papers mention ppt-MIR534b
(1 sentences)

Sequence

gcacucauguaugcaacuuguauggacagagugacuagucuaguguucacgagugccaauuuuuggaugccuucuauugcugugcuggucugugaggcggcguaacuccuuguuuugcaacaguugacagugcacaaaguauauguguggcuggugacgugcgacgcauuggguaagaucuaugucucuucagugcgcggggaaguuuguccgccgacggcauucagauugcuaaacuagacucgucagUAUGUCCAUUACAGUUGCAUACuugugugg
.(((.((.((((((((((.(((((((((.(.((((.((((((((((....(((((((......((((((.(((((....((((((.......(((((.((((((((((..(((.(((((.(.(((..(((((((((.......))))).))))..))))))))).)))..))))......)))))).)))))..)))))))))))..)))))).....))))))).....))...)))))))).)))).).)))))).))))))))))))).)).))).

Structure

g   u  u          u   -      g g    u        ---  -ucac       aauuuu      -c     auug      uggucug     c      ------    cu   u     a a   ga    -     aa 
 cac ca guaugcaacu gua uggaca a ugac agucuagu   gu     gagugcc      uggaug  cuucu    cugugc       ugagg ggcgua      acuc  ugu uugca c guu  cagu gcaca  g
 ||| || |||||||||| ||| |||||| | |||| ||||||||   ||     |||||||      ||||||  |||||    ||||||       ||||| ||||||      ||||  ||| ||||| | |||  |||| |||||  u
 gug gu CAUACGUUGA CAU ACCUGU U acug ucagauca   cg     cuuacgg      gccugu  gaagg    ggcgcg       acuuc cuguau      uggg  acg agcgu g cag  gucg ugugu  a
g   u  u          -   U      A g    c        aau  uuaga       -cagcc      uu     ----      -----ug     u      cuagaa    uu   c     - -   ug    g     au 

Annotation confidence Not enough data

Genome context

Chr05: 16401422-16401700 [-]

Mature ppt-miR534b

• Accession: MIMAT0004363
• Description: Physcomitrella patens ppt-miR534b mature miRNA
• Sequence: 250 - UAUGUCCAUUACAGUUGCAUAC - 271
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769