miRBase entry: ppt-MIR477c

Stem-loop ppt-MIR477c


Accession
MI0005671
Description
Physcomitrella patens ppt-MIR477c precursor miRNA
Gene family
MIPF0000216; MIR477

Literature search
1 open access papers mention ppt-MIR477c
(11 sentences)

Sequence

guugauuuuucCUCUCCCUCAAAGGCUUCCAacguccuuuuugugagcaagcacgcuggaagucuuuguugaagaggaggaaaca
..((.((((((((((.(..((((((((((((.(((.(((.........))).))).))))))))))))..).)))))))))).))

Structure
gu  a          C CU            a   c   uuu 
  ug uuuuucCUCU C  CAAAGGCUUCCA cgu cuu   g
  || |||||||||| |  |||||||||||| ||| |||   u
  ac aaggaggaga g  guuucugaaggu gca gaa   g
--  a          a uu            c   c   cga 


Annotation confidence Not enough data
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Comments
This sequence was named miR473a in [1]. The miR477 family contains miRNAs previously called miR473, miR1210 and miR1213 here. The names and sequences are rationalised in [2]. The mature sequence shown here is the most abundant clone by deep-sequencing [2].

Genome context
Chr25: 5057729-5057813 [-]

Database links

Mature ppt-miR477c

Accession MIMAT0004359
Description Physcomitrella patens ppt-miR477c mature miRNA
Sequence 12 - CUCUCCCUCAAAGGCUUCCA - 31
Evidence experimental
Northern [1], 454 [2], cloned [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769