miRBase entry: ppt-MIR408a

Stem-loop ppt-MIR408a


Accession
MI0005668
Description
Physcomitrella patens ppt-MIR408a precursor miRNA

Literature search
1 open access papers mention ppt-MIR408a
(4 sentences)

Sequence

acaaccagcaCUGCACUGCAUCUUCCCUGUGCcaucuucgucgauugucucguaccgaaagugauucaaccacagcgagaucagacucaacuguuaaagcugaugacacugauacgagaugaugaagacauaggcagggcagccagug
........(((((..((((.(((..((((((...((((((((....((((((((.....((((..(((....((((.....(((......))).....)))).)))))))..)))))))))))))))))))))).))))))).)))))

Structure
acaaccag     CA    A   UC      Cca        gauu        ccgaa    au   acca    gagau   ac 
        caCUG  CUGC UCU  CCUGUG   ucuucguc    gucucgua     agug  uca    cagc     cag  u
        |||||  |||| |||  ||||||   ||||||||    ||||||||     ||||  |||    ||||     |||   
        gugac  gacg gga  ggauac   agaaguag    uagagcau     ucac  agu    gucg     guc  c
--------     -c    -   -c      ---        ----        ---ag    --   ---a    aaauu   aa 


Annotation confidence Not enough data
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Genome context
Chr03: 17195194-17195341 [+]

Database links

Mature ppt-miR408a

Accession MIMAT0004356
Description Physcomitrella patens ppt-miR408a mature miRNA
Sequence 11 - CUGCACUGCAUCUUCCCUGUGC - 32
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13