miRBase entry: ppt-MIR319e

Stem-loop ppt-MIR319e


Accession
MI0005665
Description
Physcomitrella patens ppt-MIR319e precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
3 open access papers mention ppt-MIR319e
(15 sentences)

Sequence

cuagccgugggagcuccuuccgguucaauaguggcugaugugagguugcacugcugccgauucaaacuuccggcuucccuuucuuaacacgacagggaauccgaaugucugaugcgggagcugugcggucuucaacuuuagcgccuCUUGGACUGAAGGGAGCUCCCaagucuu
..((.(.((((((((((((.((((((((.((..(((((.((((((((((((.(((.(((..(((.((...(((.((((((.((.......)).)))))).)))...)).)))..))).))).)))))).)))).)).)))))..)).)))))))).)))))))))))).).)).

Structure
cu  c g            c        u  ug     u  -    -      u   g   au   a  uuc   c      u  uu 
  ag c ugggagcuccuu cgguucaa ag  gcuga gu gagg uugcac gcu ccg  uca ac   cgg uucccu uc  a
  || | |||||||||||| |||||||| ||  ||||| || |||| |||||| ||| |||  ||| ||   ||| |||||| ||  a
  uc g aCCCUCGAGGGA GUCAGGUU uc  cgauu ca cuuc ggcgug cga ggc  agu ug   gcc aaggga ag  c
-u  u a            A        C  cg     u  a    u      u   g   gu   c  uaa   u      c  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr15: 7525796-7525969 [-]

Database links

Mature ppt-miR319e

Accession MIMAT0004354
Description Physcomitrella patens ppt-miR319e mature miRNA
Sequence 147 - CUUGGACUGAAGGGAGCUCCC - 167
Evidence experimental
454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769