miRBase entry: ppt-MIR160c

Stem-loop ppt-MIR160c


Accession
MI0005657
Description
Physcomitrella patens ppt-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention ppt-MIR160c
(9 sentences)

Sequence

auauuggaucCGCCUGGCUCCCUGCAUGCCAcuugcgaaucuugccaaacguuuugucgggguucauggcuggcguguggggggucagacaggccauaca
....(((.((.(.((((((((((((((((((.(((.((((((((.((((...)))).)))))))).))).)))))))))))))))))).).)))))....

Structure
auau   a  C C                  c   c        c    c 
    ugg uc G CUGGCUCCCUGCAUGCCA uug gaaucuug caaa  
    ||| || | |||||||||||||||||| ||| |||||||| |||| g
    acc gg c gacuggggggugugcggu ggu cuuggggc guuu  
acau   -  a a                  c   a        u    u 


Annotation confidence Not enough data
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Genome context
Chr18: 6744327-6744426 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR160c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR160c

Accession MIMAT0004349
Description Physcomitrella patens ppt-miR160c mature miRNA
Sequence 11 - CGCCUGGCUCCCUGCAUGCCA - 31
Evidence experimental
454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769