miRBase entry: ppt-MIR160b

Stem-loop ppt-MIR160b


Accession
MI0005656
Description
Physcomitrella patens ppt-MIR160b precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention ppt-MIR160b
(9 sentences)

Sequence

augcuagaucCGCCUGGCUCCCUGUAUGCCAacugcgagccuugcuaaauauuuguuugccuugauucauagcuggcguucagggagucaagcagaccuugcg
..((.((.((.((.((((((((((.((((((.(((.(((.(..(.(((((....))))).)..).))).))).)))))).)))))))))).)).)).)).)).

Structure
au  u  a  C  C          U      a   c   c uu c     a 
  gc ag uc GC UGGCUCCCUG AUGCCA cug gag c  g uaaau u
  || || || || |||||||||| |||||| ||| ||| |  | |||||  
  cg uc ag cg acugagggac ugcggu gau cuu g  c guuug u
-g  u  c  a  a          u      c   a   a uu c     u 


Annotation confidence Not enough data
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Genome context
Chr18: 6744966-6745068 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR160b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR160b

Accession MIMAT0004348
Description Physcomitrella patens ppt-miR160b mature miRNA
Sequence 11 - CGCCUGGCUCCCUGUAUGCCA - 31
Evidence not_experimental

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13