miRBase entry: ppt-MIR156c

Stem-loop ppt-MIR156c


Accession
MI0005654
Description
Physcomitrella patens ppt-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention ppt-MIR156c
(10 sentences)

Sequence

gagugggagUGACAGAAGAGAGUGAGCACaguugagcauguacgagggugacguacuugcugaagugugcucacucucuucaugucacgccucuc
(((.(((.((((((((((((((((((((((.((.((((.(((((.......))))).)))).)).)))))))))))))))).)))))).))))))

Structure
   u   a      -                g  g    u     ag 
gag ggg gUGACA GAAGAGAGUGAGCACa uu agca guacg  g
||| ||| |||||| |||||||||||||||| || |||| |||||  g
cuc ucc cacugu cuucucucacucgugu aa ucgu caugc  u
   -   g      a                g  g    u     ag 


Annotation confidence Not enough data
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Genome context
Chr18: 10522192-10522286 [-]

Database links

Mature ppt-miR156c

Accession MIMAT0004346
Description Physcomitrella patens ppt-miR156c mature miRNA
Sequence 10 - UGACAGAAGAGAGUGAGCAC - 29
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769