miRBase entry: ghr-MIR396a

Stem-loop ghr-MIR396a


Accession
MI0005650
Description
Gossypium hirsutum ghr-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
17 open access papers mention ghr-MIR396a
(42 sentences)

Sequence

cuucguauucUUCCACAGCUUUCUUGAACUGcaauuucauguaaucagaucauucauucauucguugucguugauggugcugcauauauacgaguacguuguugcgguucaauaaagcugugggaagauacaaaca
....(((((.((((((((((((.((((((((((((((((((((..(((((((((.((.((.....))..)).)))))).)))..)))))..)))......)))))))))))).)))))))))))).))))).....

Structure
-cuuc     c            C            ------   --     au   -      c  -u  u 
     guauu UUCCACAGCUUU UUGAACUGcaau      uuc  augua  cag aucauu au  ca u
     ||||| |||||||||||| ||||||||||||      |||  |||||  ||| |||||| ||  || c
     cauag agggugucgaaa aacuuggcguug      gag  uauau  guc ugguag ug  gu g
acaaa     a            u            uugcau   ca     ac   g      u  cu  u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ghr-miR396a

Accession MIMAT0005818
Description Gossypium hirsutum ghr-miR396a mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUG - 31
Evidence not_experimental

References

  1. PubMed ID: 18603441
    Identification of micro-RNAs in cotton
    "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
    "Plant Physiol Biochem (2008) 46:739-751