Stem-loop ghr-MIR162a

Accession

MI0005644

Description

Gossypium hirsutum ghr-MIR162a precursor miRNA

Gene family

MIPF0000127; MIR162_1

Literature search

12 open access papers mention ghr-MIR162a
(24 sentences)

Sequence

uuuuuagcguugggguaaagacacuggaggcagcgguucaucgaucucuuccugagaauuuuguugugagaauaacacaaauacaugaaucgaUCGAUAAACCUCUGCAUCCAGcgccuuaacucuccaugaaguuuuauguuaguua
...((((((((((((..(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))).).)))....))))).........)))))))...

Structure

uuu       ---------     --ua   a a     g    c    c       uc   c  aga    -      g 
   uuagcgu         ugggg    aag c cugga gcag gguu aucgauc  uuc ug   auuu uguugu a
   |||||||         |||||    ||| | ||||| |||| |||| |||||||  ||| ||   |||| ||||||  
   gauugua         accuc    uuc g GACCU CGUC CCAA UAGCUag  aag ac   uaaa acaaua g
auu       uuuugaagu     ucaa   c c     A    U    A       cu   u  --a    c      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR162a

• Accession: MIMAT0005812
• Description: Gossypium hirsutum ghr-miR162a mature miRNA
• Sequence: 94 - UCGAUAAACCUCUGCAUCCAG - 114
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751