Stem-loop sequence mtr-MIR399n

Accession

MI0005609 (change log)

Description

Medicago truncatula miR399n stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399n
(22 sentences)

Stem-loop

   ag  a       ug     a           uauggugauauuucauuu 
5'   uc uagggca  ucucu uuggcagguga                  g
     || |||||||  ||||| |||||||||||                   
3'   ag aucccgu  agagg aaccguucacu                  a
   ug  c       cg     a           uaaagaucucggaauuuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 21480330-21480429 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR399n

• mtr-MIR5281e: chr6: 21484129-21484271 [+]
• mtr-MIR399n: chr6: 21480330-21480429 [-]

Database links

• miRBase Tracker:MI0005609

Mature sequence mtr-miR399n

• Accession: MIMAT0011095
• Sequence: 75 - ugccaaaggagagcugcccua - 95
• Evidence: by similarity; MI0001022

References

1. " Bonnet E Unpublished (2007).