miRBase entry: mtr-MIR168a

Stem-loop mtr-MIR168a


Accession
MI0005603
Description
Medicago truncatula mtr-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
6 open access papers mention mtr-MIR168a
(23 sentences)

Sequence

cugauUUGCUUGGUGCUGGUCGGGAAccauuacauccacaguuuccguagaaacuuucccuuaguaaauuggaccccgucuugcaucaaucgaaucag
((((((((.(((((((.((.((((..(((((((......((((((....))))))........))))..)))..)))).)).))))))).))))))))

Structure
        C       U  U    AA   --    --auccac      c 
cugauUUG UUGGUGC GG CGGG  cca  uuac        aguuuc g
|||||||| ||||||| || ||||  |||  ||||        ||||||  
gacuaagc aacuacg uc gccc  ggu  aaug        ucaaag u
        u       u  u    ca   ua    auucccuu      a 


Annotation confidence Not enough data
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Genome context
chr5: 41779400-41779497 [-]

Database links

Mature mtr-miR168a

Accession MIMAT0011089
Description Medicago truncatula mtr-miR168a mature miRNA
Sequence 6 - UUGCUUGGUGCUGGUCGGGAA - 26
Evidence experimental
454 [2], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None: