Stem-loop sequence mtr-MIR399j

Accession

MI0005591 (change log)

Description

Medicago truncatula miR399j stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399j
(22 sentences)

Stem-loop

   --uuacu      uga          a  -    gac   -     u 
5'        gggcaa   cuucuuuggc gu aguu   uug aucau c
          ||||||   |||||||||| || ||||   ||| |||||  
3'        cccguu   gaagaaaccg ca ucaa   aac uagua a
   uuaacgc      -ua          c  c    aca   g     g 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
chr8: 24001880-24001970 [+]	intergenic
chr8: 24173628-24173718 [+]	intergenic

Clustered miRNAs

< 10kb from mtr-MIR399j

• mtr-MIR399h: chr8: 23153129-23153218 [+]
• mtr-MIR399g: chr8: 23158805-23158908 [-]
• mtr-MIR399g: chr8: 23994507-23994610 [+]
• mtr-MIR399h: chr8: 24000209-24000298 [-]
• mtr-MIR399j: chr8: 24001880-24001970 [+]
• mtr-MIR399k: chr8: 24004937-24005030 [-]
• mtr-MIR5246: chr8: 24009245-24009314 [-]
• mtr-MIR399c: chr8: 24010865-24010983 [-]
• mtr-MIR399h: chr8: 24050903-24050992 [+]
• mtr-MIR399g: chr8: 24161515-24161618 [+]
• mtr-MIR399h: chr8: 24167198-24167287 [-]
• mtr-MIR399j: chr8: 24173628-24173718 [+]
• mtr-MIR399k: chr8: 24176682-24176775 [-]
• mtr-MIR5246: chr8: 24180980-24181049 [-]
• mtr-MIR399c: chr8: 24182595-24182713 [-]
• mtr-MIR399g: chr8: 24230599-24230702 [+]

Database links

• miRBase Tracker:MI0005591

Mature sequence mtr-miR399j

• Accession: MIMAT0011077
• Sequence: 66 - cgccaaagaagauuugccccg - 86
• Evidence: by similarity; MI0001023

References

1. " Bonnet E Unpublished (2007).