Stem-loop sequence mtr-MIR399i

Accession

MI0005590 (change log)

Description

Medicago truncatula miR399i stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399i
(22 sentences)

Stem-loop

       a   a          a  a     -ac      gaaa  uug 
5' aaug uag gcaaaucucu uu gcaga   gaagua    gc   g
   |||| ||| |||||||||| || |||||   ||||||    ||    
3' uuac guc cguuuagagg aa cguuu   cuucgu    cg   a
       c   c          a  c     ggu      ---a  uac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 24171964-24172053 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR399i

• mtr-MIR5246: chr8: 24180980-24181049 [-]
• mtr-MIR399k: chr8: 24176682-24176775 [-]
• mtr-MIR399j: chr8: 24173628-24173718 [+]
• mtr-MIR399i: chr8: 24171964-24172053 [-]
• mtr-MIR399h: chr8: 24167198-24167287 [-]
• mtr-MIR399h: chr8: 24050903-24050992 [+]
• mtr-MIR5246: chr8: 24009245-24009314 [-]
• mtr-MIR399k: chr8: 24004937-24005030 [-]
• mtr-MIR399j: chr8: 24001880-24001970 [+]
• mtr-MIR399h: chr8: 24000209-24000298 [-]
• mtr-MIR399h: chr8: 23153129-23153218 [+]

Database links

• miRBase Tracker:MI0005590

Mature sequence mtr-miR399i

• Accession: MIMAT0011076
• Sequence: 65 - ugccaaaggagauuugcccug - 85
• Evidence: by similarity; MI0001023

References

1. " Bonnet E Unpublished (2007).