Stem-loop sequence mtr-MIR166c

Accession

MI0005581 (change log)

Description

Medicago truncatula miR166c stem-loop

Gene family

MIPF0000004; MIR166

Literature search

9 open access papers mention mtr-MIR166c
(40 sentences)

Stem-loop

   gc  a      c c       cu      augcucagaucuguuuugaucu 
5'   ug gaggaa g agucugg  cgagga                      g
     || |||||| | |||||||  ||||||                      a
3'   ac cuccuu c ucggacc  gcucuu                      u
   cu  c      a u       ag      aauuaaucuauacuuguauagc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 33641974-33642078 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR166c

• mtr-MIR166d: chr3: 33642148-33642238 [-]
• mtr-MIR166c: chr3: 33641974-33642078 [-]

Database links

• miRBase Tracker:MI0005581

Mature sequence mtr-miR166c

• Accession: MIMAT0011067
• Sequence: 80 - ucggaccaggcuucauuccuc - 100
• Evidence: experimental; Illumina [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).