Stem-loop sequence mtr-MIR167a

Accession

MI0005572 (change log)

Previous IDs

mtr-MIR167

Description

Medicago truncatula miR167 stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

3 open access papers mention mtr-MIR167a
(13 sentences)

Stem-loop

   -aaa     a   -  -             guuu      acaa           ---agaa   acua    -  u  u         a             gauuacucucuuucacaaaauagguauuaaagugccaugauuuuugcauuacuaaugggaaa 
5'     aguga gcu gc cagcaugaucuag    gguuau    uaguaguauug       gga    uaua cg uu uuuuuuacu uaccacaaaaaaa                                                              a
       ||||| ||| || |||||||||||||    ||||||    |||||||||||       |||    |||| || || ||||||||| |||||||||||||                                                              u
3'     ucacu cga cg gucguacuggauc    ccaaua    aucgucaugau       ccu    auau gc ga aaaaaauga augguguuuuuuu                                                              a
   uucc     c   u  u             aguc      --cg           gaacaua   ----    c  c  u         c             auggugguuuuggauaaaggauagauauauuuuuuuuucacucuuuaagccacagguuuuaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr1: 17502130-17502449 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005572

Mature sequence mtr-miR167a

• Accession: MIMAT0011058
• Previous IDs: mtr-miR167
• Sequence: 6 - ugaagcugccagcaugaucua - 26
• Evidence: experimental; 454 [2], Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).