miRBase entry: mmu-mir-875

Stem-loop mmu-mir-875


Accession
MI0005551
Symbol
MGI: Mir875
Description
Mus musculus mmu-mir-875 precursor miRNA
Gene family
MIPF0000424; mir-875

Literature search
4 open access papers mention mmu-mir-875
(5 sentences)

Sequence

255 reads, 22 reads per million, 20 experiments
ucugugguacUAUACCUCAGUUUUAUCAGGUGuucauuaaaaucaCCUGAAAAUACUGAGGCUAUGuuucacugagca
((.((((.((.((((((((((.((.(((((((...........))))))).)).))))))).))))).)))).))...

Structure
---  u    u  U   -       U  A       uuca 
   uc gugg ac AUA CCUCAGU UU UCAGGUG    u
   || |||| || ||| ||||||| || |||||||    u
   ag cacu uG UAU GGAGUCA AA AGUCCac    a
acg  u    u  -   C       U  A       uaaa 


Annotation confidence High
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown in human and rat [2].

Genome context
chr15: 35660970-35661047 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-875
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-875-5p

Accession MIMAT0004937
Description Mus musculus mmu-miR-875-5p mature miRNA
Sequence 11 - UAUACCUCAGUUUUAUCAGGUG - 32
Evidence experimental
RAKE [1], Illumina [3]
Database links
Predicted targets

Mature mmu-miR-875-3p

Accession MIMAT0004938
Description Mus musculus mmu-miR-875-3p mature miRNA
Sequence 46 - CCUGAAAAUACUGAGGCUAUG - 66
Evidence experimental
RAKE [1], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298