Stem-loop sequence mmu-mir-872

Accession

MI0005549 (change log)

Symbol

MGI:Mir872

Description

Mus musculus miR-872 stem-loop

Gene family

MIPF0000399; mir-872

Literature search

4 open access papers mention mmu-mir-872
(13 sentences)

Stem-loop

   --    u     a        u  --         accucau 
5'   aacu guuag agguuacu gu  uaguucagg       u
     |||| ||||| |||||||| ||  |||||||||        
3'   uugg caauc uccgauga cg  aucaagucc       a
   ua    u     c        -  uu         gucuuuc 

Deep sequencing

231039 reads, 633 reads per million, 104 experiments

Confidence

Annotation confidence: high

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Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was later confirmed by cloning [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 94665157-94665237 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000017883 ; Ift74-001; intron 13

  ENSMUST00000030311 ; Ift74-001; intron 13

Database links

• EntrezGene:Mir872
• MGI:Mir872
• RNAcentral:URS00006ACB8E_10090
• miRBase Tracker:MI0005549

Mature sequence mmu-miR-872-5p

• Accession: MIMAT0004934
• Previous IDs: mmu-miR-872
• Sequence: 11 - aagguuacuuguuaguucagg - 31
• Deep sequencing: 197062 reads, 103 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00000386E7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-872-5p
  • miRDB:mmu-miR-872-5p
  • microrna.org:mmu-miR-872-5p

Mature sequence mmu-miR-872-3p

• Accession: MIMAT0004935
• Previous IDs: mmu-miR-872*
• Sequence: 50 - ugaacuauugcaguagccuccu - 71
• Deep sequencing: 33970 reads, 104 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00003E3515_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-872-3p
  • miRDB:mmu-miR-872-3p
  • microrna.org:mmu-miR-872-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).