Stem-loop sequence mmu-mir-654

Accession

MI0005520 (change log)

Symbol

MGI:Mir654

Description

Mus musculus miR-654 stem-loop

Gene family

MIPF0000409; mir-654

Literature search

11 open access papers mention mmu-mir-654
(46 sentences)

Stem-loop

   ------     uaagu  gaa      aagcu     a      uguuu 
5'       cucgg     gg   gauggu     gcaga caugug     c
         |||||     ||   ||||||     ||||| ||||||      
3'       ggguu     cc   cuacca     cgucu guauac     u
   gucucu     ----u  --a      ---gu     -      uguac 

Deep sequencing

689 reads, 6.67 reads per million, 15 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109723218-109723301 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-654

• mmu-mir-329: chr12: 109713481-109713577 [+]
• mmu-mir-494: chr12: 109715318-109715402 [+]
• mmu-mir-679: chr12: 109715577-109715650 [+]
• mmu-mir-1193: chr12: 109715671-109715791 [+]
• mmu-mir-666: chr12: 109717085-109717183 [+]
• mmu-mir-543: chr12: 109717258-109717333 [+]
• mmu-mir-495: chr12: 109718754-109718816 [+]
• mmu-mir-667: chr12: 109720006-109720097 [+]
• mmu-mir-376c: chr12: 109722718-109722803 [+]
• mmu-mir-654: chr12: 109723218-109723301 [+]
• mmu-mir-376b: chr12: 109723458-109723539 [+]
• mmu-mir-376a: chr12: 109723781-109723848 [+]
• mmu-mir-300: chr12: 109724313-109724391 [+]
• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]
• mmu-mir-544: chr12: 109729325-109729402 [+]

Database links

• EntrezGene:Mir654
• MGI:Mir654
• miRBase Tracker:MI0005520

Mature sequence mmu-miR-654-5p

• Accession: MIMAT0004897
• Sequence: 18 - ugguaagcugcagaacaugugu - 39
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mmu-miR-654-5p
  • miRDB:mmu-miR-654-5p
  • microrna.org:mmu-miR-654-5p

Mature sequence mmu-miR-654-3p

• Accession: MIMAT0004898
• Sequence: 53 - uaugucugcugaccaucaccuu - 74
• Deep sequencing: 685 reads, 12 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mmu-miR-654-3p
  • miRDB:mmu-miR-654-3p
  • microrna.org:mmu-miR-654-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).