Stem-loop mmu-mir-654

Accession

MI0005520

Symbol

MGI: Mir654

Description

Mus musculus mmu-mir-654 precursor miRNA

Gene family

MIPF0000409; mir-654

Literature search

11 open access papers mention mmu-mir-654
(46 sentences)

Sequence

21 reads, 109 reads per million, 9 experiments

cucgguaagugggaagaUGGUAAGCUGCAGAACAUGUGUguuucucaugucaUAUGUCUGCUGACCAUCACCUUugggucucug
((((.....))))..((((((.....(((((.((((((............)))))))))))..))))))(((....))).....

Structure

cucgguaagugggaa      AAGCU     A      Uguuu 
               gaUGGU     GCAGA CAUGUG     c
               ||||||     ||||| ||||||      
               CUACCA     CGUCU GUAUac     u
gucucuggguUUCCA      ---GU     -      uguac 

Annotation confidence High

Genome context

chr12: 109723218-109723301 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from mmu-mir-654

Mature mmu-miR-654-5p

• Accession: MIMAT0004897
• Description: Mus musculus mmu-miR-654-5p mature miRNA
• Sequence: 18 - UGGUAAGCUGCAGAACAUGUGU - 39
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-654-3p

• Accession: MIMAT0004898
• Description: Mus musculus mmu-miR-654-3p mature miRNA
• Sequence: 53 - UAUGUCUGCUGACCAUCACCUU - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471