Stem-loop sequence mmu-mir-509

Accession

MI0005516 (change log)

Symbol

MGI:Mir509

Description

Mus musculus miR-509 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

6 open access papers mention mmu-mir-509
(10 sentences)

Stem-loop

   --   guu     cuc     u   g       gcaua 
5'   gug   cuuua   cagaa gug caaucau     a
     |||   |||||   ||||| ||| |||||||      
3'   cac   gaggu   gucuu uac guuagug     u
   ua   aau     aau     -   a       uaaau 

Deep sequencing

2 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 68010105-68010179 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir509
• MGI:Mir509
• miRBase Tracker:MI0005516

Mature sequence mmu-miR-509-5p

• Accession: MIMAT0004890
• Sequence: 10 - uacuccagaauguggcaaucau - 31
• Deep sequencing: 1 reads, 1 experiments
• Evidence: by similarity; MI0005717
• Predicted targets:
  • TargetScanVert:mmu-miR-509-5p
  • miRDB:mmu-miR-509-5p
  • microrna.org:mmu-miR-509-5p

Mature sequence mmu-miR-509-3p

• Accession: MIMAT0004891
• Sequence: 45 - ugauugacauuucuguaaugg - 65
• Deep sequencing: 1 reads, 1 experiments
• Evidence: by similarity; MI0005717
• Predicted targets:
  • TargetScanVert:mmu-miR-509-3p
  • miRDB:mmu-miR-509-3p
  • microrna.org:mmu-miR-509-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).