Stem-loop mmu-mir-493

Accession

MI0005514

Symbol

MGI: Mir493

Description

Mus musculus mmu-mir-493 precursor miRNA

Gene family

MIPF0000230; mir-493

Literature search

13 open access papers mention mmu-mir-493
(31 sentences)

Sequence

4707 reads, 107 reads per million, 57 experiments

cgccagggccUUGUACAUGGUAGGCUUUCauucauuuuuugcacauucggUGAAGGUCCUACUGUGUGCCAGGcccugugcca
.((((((((((.((((((((((((((((((((................)))))))).)))))))))))).)))))))).))..

Structure

-c  -        U            -        cauuuuu 
  gc cagggccU GUACAUGGUAGG CUUUCauu       u
  || |||||||| |||||||||||| ||||||||        
  cg gucccGGA CGUGUGUCAUCC GGAAGUgg       g
ac  u        C            U        cuuacac 

Annotation confidence High

Genome context

chr12: 109580233-109580315 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from mmu-mir-493

Mature mmu-miR-493-5p

• Accession: MIMAT0017276
• Description: Mus musculus mmu-miR-493-5p mature miRNA
• Sequence: 11 - UUGUACAUGGUAGGCUUUC - 29
• Evidence: experimental ; 454 [3], Illumina [4]

Mature mmu-miR-493-3p

• Accession: MIMAT0004888
• Description: Mus musculus mmu-miR-493-3p mature miRNA
• Sequence: 51 - UGAAGGUCCUACUGUGUGCCAGG - 73
• Evidence: experimental ; Illumina [2,4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275