miRBase entry: mmu-mir-467d

Stem-loop mmu-mir-467d


Accession
MI0005513
Symbol
MGI: Mir467d
Description
Mus musculus mmu-mir-467d precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
20 open access papers mention mmu-mir-467d
(63 sentences)

Sequence

24488 reads, 631 reads per million, 104 experiments
ccugugugcaUAAGUGCGCGCAUGUAUAUGCGuguauauuuuaugcAUAUACAUACACACACCUACACacacaugcacacagaca
.((((((((((..(((.(.(.(((((((((((((.......))))))))))))).).).)))..........))))))))))...

Structure
--c          --------AA   C C C             ua 
   cugugugcaU          GUG G G AUGUAUAUGCGug  u
   ||||||||||          ||| | | |||||||||||||  a
   gacacacgua          CAC C C UACAUAUAcguau  u
aca          cacaCACAUC   A A A             uu 


Annotation confidence High
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Genome context
chr2: 10507630-10507714 [+]
Clustered miRNAs
24 other miRNAs are < 10 kb from mmu-mir-467d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-467d-5p

Accession MIMAT0004886
Description Mus musculus mmu-miR-467d-5p mature miRNA
Sequence 11 - UAAGUGCGCGCAUGUAUAUGCG - 32
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-467d-3p

Accession MIMAT0004887
Description Mus musculus mmu-miR-467d-3p mature miRNA
Sequence 47 - AUAUACAUACACACACCUACAC - 68
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009