Stem-loop sequence mmu-mir-465b-1

Accession

MI0005498 (change log)

Symbol

MGI:Mir465b-1

Description

Mus musculus miR-465b-1 stem-loop

Gene family

MIPF0000384; mir-465

Literature search

7 open access papers mention mmu-mir-465b-1
(29 sentences)

Stem-loop

   --u  aa   c          u   g      ugaugaa 
5'    gc  ugc cuauuuagaa ggu cugauc       a
      ||  ||| |||||||||| ||| ||||||       u
3'    cg  aug gaugaaucuu ccg gacuag       a
   auu  ga   a          u   g      uuaaaaa 

Deep sequencing

318585 reads, 2.35e+03 reads per million, 61 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66829202-66829280 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-465b-1

• mmu-mir-465a: chrX: 66839052-66839125 [-]
• mmu-mir-465b-2: chrX: 66835764-66835842 [-]
• mmu-mir-465c-2: chrX: 66832517-66832597 [-]
• mmu-mir-465b-1: chrX: 66829202-66829280 [-]
• mmu-mir-465c-1: chrX: 66825955-66826035 [-]
• mmu-mir-465d: chrX: 66822656-66822713 [-]

Database links

• EntrezGene:Mir465b-1
• MGI:Mir465b-1
• RNAcentral:URS0000759E56_10090
• miRBase Tracker:MI0005498

Mature sequence mmu-miR-465b-5p

• Accession: MIMAT0004871
• Sequence: 11 - uauuuagaauggugcugaucug - 32
• Deep sequencing: 246836 reads, 51 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000030638_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-465b-5p
  • miRDB:mmu-miR-465b-5p
  • microrna.org:mmu-miR-465b-5p

Mature sequence mmu-miR-465b-3p

• Accession: MIMAT0004872
• Sequence: 48 - gaucagggccuuucuaaguaga - 69
• Deep sequencing: 390328 reads, 51 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00004AB1CD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-465b-3p
  • miRDB:mmu-miR-465b-3p
  • microrna.org:mmu-miR-465b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).