Stem-loop sequence mmu-mir-344-2

Accession

MI0005495 (change log)

Symbol

MGI:Mir344-2

Description

Mus musculus miR-344-2 stem-loop

Gene family

MIPF0000267; mir-344

Literature search

9 open access papers mention mmu-mir-344-2
(32 sentences)

Stem-loop

   ----uu     c         cc         uc        a 
5'       uuuac agucaggcu  uggcuagau  cagguacc a
         ||||| |||||||||  |||||||||  ||||||||  
3'       gaaug ucaguccga  accgaucua  guccaugg c
   aacguc     -         -a         --        u 

Deep sequencing

20850 reads, 87 reads per million, 54 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 61940027-61940106 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000181804 ; A330076H08Rik-203; intron 4

Database links

• EntrezGene:Mir344-2
• MGI:Mir344-2
• RNAcentral:URS0000759C8E_10090
• miRBase Tracker:MI0005495

Mature sequence mmu-miR-344-5p

• Accession: MIMAT0017038
• Previous IDs: mmu-miR-344*
• Sequence: 9 - agucaggcuccuggcuagauuccagg - 34
• Deep sequencing: 112 reads, 14 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000012FB60_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-344-5p
  • miRDB:mmu-miR-344-5p

Mature sequence mmu-miR-344-3p

• Accession: MIMAT0000593
• Previous IDs: mmu-miR-344
• Sequence: 49 - ugaucuagccaaagccugacugu - 71
• Deep sequencing: 41588 reads, 54 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000504AEF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-344-3p
  • miRDB:mmu-miR-344-3p
  • microrna.org:mmu-miR-344-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).