Stem-loop sequence mmu-mir-297c

Accession

MI0005492 (change log)

Symbol

MGI:Mir297c

Description

Mus musculus miR-297c stem-loop

Gene family

MIPF0000204; mir-297

Literature search

9 open access papers mention mmu-mir-297c
(10 sentences)

Stem-loop

   ----c       aua          ca    --------ca            aa 
5'      ugugugu   uguaugugug  ugua          uguguguauaug  u
        |||||||   ||||||||||  ||||          ||||||||||||   
3'      acacaca   acauacguac  acau          acauacauauac  a
   uaaaa       --a          aa    acccauacac            au 

Deep sequencing

17492 reads, 111 reads per million, 103 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10509016-10509113 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-297c

• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir297c
• MGI:Mir297c
• RNAcentral:URS000075BD6F_10090
• miRBase Tracker:MI0005492

Mature sequence mmu-miR-297c-5p

• Accession: MIMAT0004865
• Previous IDs: mmu-miR-297c
• Sequence: 11 - auguaugugugcauguacaugu - 32
• Deep sequencing: 10565 reads, 86 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000156FD8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297c-5p
  • miRDB:mmu-miR-297c-5p
  • microrna.org:mmu-miR-297c-5p

Mature sequence mmu-miR-297c-3p

• Accession: MIMAT0004866
• Previous IDs: mmu-miR-297c*
• Sequence: 50 - uauacauacacacauacccaua - 71
• Deep sequencing: 6900 reads, 93 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000D45B2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297c-3p
  • miRDB:mmu-miR-297c-3p
  • microrna.org:mmu-miR-297c-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).