Stem-loop sequence mmu-mir-147

Accession

MI0005482 (change log)

Symbol

MGI:Mir147

Description

Mus musculus miR-147 stem-loop

Gene family

MIPF0000105; mir-147

Literature search

19 open access papers mention mmu-mir-147
(63 sentences)

Stem-loop

   --  ug   c   ug   a            --------   u 
5'   ua  aau uag  gaa cauuucugcaca        aac a
     ||  ||| |||  ||| ||||||||||||        ||| g
3'   au  uua auc  cuu guaaaggcgugu        uug a
   gg  gu   c   gu   c            gaccguag   u 

Deep sequencing

20419 reads, 59.6 reads per million, 94 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 122640803-122640881 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000110462 ; RP23-101F14.3-004; exon 3

  OTTMUST00000037240 ; RP23-101F14.3-002; exon 4

  OTTMUST00000037239 ; RP23-101F14.3-001; exon 5

  ENSMUST00000175727 ; AA467197-004; exon 3

  ENSMUST00000110512 ; AA467197-002; exon 4

  ENSMUST00000047498 ; AA467197-001; exon 5

Database links

• EntrezGene:Mir147
• MGI:Mir147
• RNAcentral:URS000075B621_10090
• miRBase Tracker:MI0005482

Mature sequence mmu-miR-147-5p

• Accession: MIMAT0017269
• Previous IDs: mmu-miR-147*
• Sequence: 12 - uggaaacauuucugcacaaacuag - 35
• Deep sequencing: 1035 reads, 47 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000605AC1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-147-5p
  • miRDB:mmu-miR-147-5p

Mature sequence mmu-miR-147-3p

• Accession: MIMAT0004857
• Previous IDs: mmu-miR-147
• Sequence: 48 - gugugcggaaaugcuucugcua - 69
• Deep sequencing: 19377 reads, 92 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000424278_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-147-3p
  • miRDB:mmu-miR-147-3p
  • microrna.org:mmu-miR-147-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).