Stem-loop sequence mmu-mir-883a

Accession

MI0005476 (change log)

Symbol

MGI:Mir883a

Description

Mus musculus miR-883a stem-loop

Gene family

MIPF0000389; mir-883

Literature search

7 open access papers mention mmu-mir-883a
(8 sentences)

Stem-loop

   --  ac              aa  a          uau 
5'   gc  uauaaugcugagag  gu gcaguuacuu   u
     ||  ||||||||||||||  || ||||||||||    
3'   cg  auguuaugacucuc  ca cgucaaugaa   c
   cu  ga              ga  a          uau 

Deep sequencing

11802 reads, 677 reads per million, 43 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66780758-66780833 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-883a

• mmu-mir-883b: chrX: 66789890-66789967 [-]
• mmu-mir-883a: chrX: 66780758-66780833 [-]
• mmu-mir-742: chrX: 66780373-66780437 [-]
• mmu-mir-743b: chrX: 66777256-66777332 [-]
• mmu-mir-743a: chrX: 66776757-66776818 [-]

Database links

• EntrezGene:Mir883a
• MGI:Mir883a
• RNAcentral:URS000075DB13_10090
• miRBase Tracker:MI0005476

Mature sequence mmu-miR-883a-5p

• Accession: MIMAT0004848
• Sequence: 10 - ugcugagagaaguagcaguuac - 31
• Deep sequencing: 1490 reads, 25 experiments
• Evidence: experimental; cloned [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS00004530A8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-883a-5p
  • miRDB:mmu-miR-883a-5p
  • microrna.org:mmu-miR-883a-5p

Mature sequence mmu-miR-883a-3p

• Accession: MIMAT0004849
• Sequence: 45 - uaacugcaacagcucucaguau - 66
• Deep sequencing: 10309 reads, 40 experiments
• Evidence: experimental; cloned [1], 454 [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00004D8F58_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-883a-3p
  • miRDB:mmu-miR-883a-3p
  • microrna.org:mmu-miR-883a-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).