miRBase entry: mmu-mir-881

Stem-loop mmu-mir-881


Accession
MI0005474
Symbol
MGI: Mir881
Description
Mus musculus mmu-mir-881 precursor miRNA
Gene family
MIPF0000429; mir-881

Literature search
3 open access papers mention mmu-mir-881
(4 sentences)

Sequence

114307 reads, 5169 reads per million, 44 experiments
ugcaguacaauauuCAGAGAGAUAACAGUCACAUCUuuucuaaaguAACUGUGUCUUUUCUGAAUAGAguaauguuca
.(((.(((..((((((((((((((.((((.((............)).)))))))).))))))))))..))).)))...

Structure
--u   g   aa          -    A    C  AUCUu 
   gca uac  uauuCAGAGA GAUA CAGU AC     u
   ||| |||  |||||||||| |||| |||| ||      
   ugu aug  AUAAGUCUUU CUGU GUCA ug     u
acu   a   AG          U    -    A  aaauc 


Annotation confidence High
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Genome context
chrX: 66801944-66802021 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mmu-mir-881
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-881-5p

Accession MIMAT0004845
Description Mus musculus mmu-miR-881-5p mature miRNA
Sequence 15 - CAGAGAGAUAACAGUCACAUCU - 36
Evidence experimental
cloned [1], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-881-3p

Accession MIMAT0004846
Description Mus musculus mmu-miR-881-3p mature miRNA
Sequence 47 - AACUGUGUCUUUUCUGAAUAGA - 68
Evidence experimental
cloned [1], 454 [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102