Stem-loop sequence mmu-mir-881

Accession

MI0005474 (change log)

Symbol

MGI:Mir881

Description

Mus musculus miR-881 stem-loop

Gene family

MIPF0000429; mir-881

Literature search

3 open access papers mention mmu-mir-881
(4 sentences)

Stem-loop

   --u   g   aa          -    a    c  aucuu 
5'    gca uac  uauucagaga gaua cagu ac     u
      ||| |||  |||||||||| |||| |||| ||      
3'    ugu aug  auaagucuuu cugu guca ug     u
   acu   a   ag          u    -    a  aaauc 

Deep sequencing

138767 reads, 2.79e+03 reads per million, 48 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66801944-66802021 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-881

• mmu-mir-871: chrX: 66810428-66810504 [-]
• mmu-mir-881: chrX: 66801944-66802021 [-]
• mmu-mir-878: chrX: 66801508-66801585 [-]
• mmu-mir-880: chrX: 66800530-66800607 [-]
• mmu-mir-463: chrX: 66799223-66799297 [-]
• mmu-mir-741: chrX: 66796805-66796875 [-]
• mmu-mir-471: chrX: 66792595-66792661 [-]

Database links

• EntrezGene:Mir881
• MGI:Mir881
• RNAcentral:URS000075DE6D_10090
• miRBase Tracker:MI0005474

Mature sequence mmu-miR-881-5p

• Accession: MIMAT0004845
• Previous IDs: mmu-miR-881*
• Sequence: 15 - cagagagauaacagucacaucu - 36
• Deep sequencing: 3421 reads, 25 experiments
• Evidence: experimental; cloned [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS000044294D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-881-5p
  • miRDB:mmu-miR-881-5p
  • microrna.org:mmu-miR-881-5p

Mature sequence mmu-miR-881-3p

• Accession: MIMAT0004846
• Previous IDs: mmu-miR-881
• Sequence: 47 - aacugugucuuuucugaauaga - 68
• Deep sequencing: 135346 reads, 46 experiments
• Evidence: experimental; cloned [1], 454 [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000039CE41_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-881-3p
  • miRDB:mmu-miR-881-3p
  • microrna.org:mmu-miR-881-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).