Stem-loop sequence mmu-mir-879

Accession

MI0005472 (change log)

Symbol

MGI:Mir879

Description

Mus musculus miR-879 stem-loop

Gene family

MIPF0000421; mir-879

Literature search

5 open access papers mention mmu-mir-879
(24 sentences)

Stem-loop

   --      g   ag      au    c        gga 
5'   uucuag ucc  aggcuu  agcu uaagccuu   u
     |||||| |||  ||||||  |||| ||||||||    
3'   gagguc agg  uucgaa  ucgg auucggag   g
   ca      g   cu      cu    u        aaa 

Deep sequencing

6308 reads, 10.3 reads per million, 58 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr5: 9375704-9375779 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000063544 ; AC157555.1-001; intron 1

  OTTMUST00000063545 ; AC157555.1-002; intron 1

  OTTMUST00000063546 ; AC157555.1-003; intron 1

  OTTMUST00000063547 ; AC157555.1-004; intron 1

  OTTMUST00000063548 ; AC157555.1-005; intron 1

  OTTMUST00000063549 ; AC157555.1-006; intron 1

  OTTMUST00000063550 ; AC157555.1-007; intron 1

  ENSMUST00000154662 ; 9330182L06Rik-007; intron 1

  ENSMUST00000115348 ; 9330182L06Rik-002; intron 1

  ENSMUST00000134991 ; 9330182L06Rik-006; intron 1

  ENSMUST00000069538 ; 9330182L06Rik-001; intron 1

  ENSMUST00000131626 ; 9330182L06Rik-004; intron 1

  ENSMUST00000152095 ; 9330182L06Rik-003; intron 1

  ENSMUST00000155764 ; 9330182L06Rik-005; intron 1

Database links

• EntrezGene:Mir879
• MGI:Mir879
• RNAcentral:URS000064E0AB_10090
• miRBase Tracker:MI0005472

Mature sequence mmu-miR-879-5p

• Accession: MIMAT0004842
• Previous IDs: mmu-miR-879
• Sequence: 11 - agaggcuuauagcucuaagcc - 31
• Deep sequencing: 5650 reads, 55 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000007F6CC_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-879-5p
  • miRDB:mmu-miR-879-5p
  • microrna.org:mmu-miR-879-5p

Mature sequence mmu-miR-879-3p

• Accession: MIMAT0004843
• Previous IDs: mmu-miR-879*
• Sequence: 45 - gcuuauggcuucaagcuuucgg - 66
• Deep sequencing: 651 reads, 31 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000014E442_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-879-3p
  • miRDB:mmu-miR-879-3p
  • microrna.org:mmu-miR-879-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).