miRBase entry: mmu-mir-743b

Stem-loop mmu-mir-743b


Accession
MI0005470
Symbol
MGI: Mir743b
Description
Mus musculus mmu-mir-743b precursor miRNA
Gene family
MIPF0000386; mir-743

Literature search
7 open access papers mention mmu-mir-743b
(9 sentences)

Sequence

49698 reads, 3974 reads per million, 52 experiments
ugcagugcugUGUUCAGACUGGUGUCCAUCAugugaaauauuuguGAAAGACAUCAUGCUGAAUAGAguaaggccca
.((..((((.(((((((..(((((((..(((((.........)))))..)))))))..))))))).))))..))...

Structure
--u  ag    g       AC       CA     uga 
   gc  ugcu UGUUCAG  UGGUGUC  UCAug   a
   ||  |||| |||||||  |||||||  |||||   a
   cg  augA AUAAGUC  ACUACAG  AGugu   u
acc  ga    G       GU       AA     uua 


Annotation confidence High
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Genome context
chrX: 66777256-66777332 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mmu-mir-743b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-743b-5p

Accession MIMAT0004839
Description Mus musculus mmu-miR-743b-5p mature miRNA
Sequence 11 - UGUUCAGACUGGUGUCCAUCA - 31
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-743b-3p

Accession MIMAT0004840
Description Mus musculus mmu-miR-743b-3p mature miRNA
Sequence 46 - GAAAGACAUCAUGCUGAAUAGA - 67
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009