Stem-loop sequence mmu-mir-743b

Accession

MI0005470 (change log)

Symbol

MGI:Mir743b

Description

Mus musculus miR-743b stem-loop

Gene family

MIPF0000386; mir-743

Literature search

7 open access papers mention mmu-mir-743b
(9 sentences)

Stem-loop

   --u  ag    g       ac       ca     uga 
5'    gc  ugcu uguucag  ugguguc  ucaug   a
      ||  |||| |||||||  |||||||  |||||   a
3'    cg  auga auaaguc  acuacag  agugu   u
   acc  ga    g       gu       aa     uua 

Deep sequencing

59009 reads, 2.04e+03 reads per million, 58 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66777256-66777332 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-743b

• mmu-mir-883a: chrX: 66780758-66780833 [-]
• mmu-mir-742: chrX: 66780373-66780437 [-]
• mmu-mir-743b: chrX: 66777256-66777332 [-]
• mmu-mir-743a: chrX: 66776757-66776818 [-]

Database links

• EntrezGene:Mir743b
• MGI:Mir743b
• RNAcentral:URS000075E8C4_10090
• miRBase Tracker:MI0005470

Mature sequence mmu-miR-743b-5p

• Accession: MIMAT0004839
• Sequence: 11 - uguucagacugguguccauca - 31
• Deep sequencing: 1852 reads, 28 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00002A9C0B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-743b-5p
  • miRDB:mmu-miR-743b-5p
  • microrna.org:mmu-miR-743b-5p

Mature sequence mmu-miR-743b-3p

• Accession: MIMAT0004840
• Sequence: 46 - gaaagacaucaugcugaauaga - 67
• Deep sequencing: 57157 reads, 56 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00004C0C6B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-743b-3p
  • miRDB:mmu-miR-743b-3p
  • microrna.org:mmu-miR-743b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).