Stem-loop sequence bta-mir-497

Accession

MI0005467 (change log)

Description

Bos taurus miR-497 stem-loop

Gene family

MIPF0000231; mir-497

Literature search

3 open access papers mention bta-mir-497
(19 sentences)

Stem-loop

   cca  c    ----   g         - -----    g    c         u  --   ac 
5'    cc cagu    ccu cucccgccc c     agca caca ugugguuug ac  ggc  u
      || ||||    ||| ||||||||| |     |||| |||| ||||||||| ||  |||   
3'    gg gucg    gga ggggguggg g     uugu gugu acaccaaac ug  ccg  g
   ---  a    ccac   -         a cgaga    g    c         c  ca   gu 

Deep sequencing

20035 reads, 179 reads per million, 67 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 27583523-27583634 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-497

• bta-mir-497: chr19: 27583523-27583634 [-]
• bta-mir-195: chr19: 27583214-27583300 [-]

Database links

• EntrezGene:MIR497
• RNAcentral:URS00006D80BC_9913
• miRBase Tracker:MI0005467

Mature sequence bta-miR-497

• Accession: MIMAT0004343
• Sequence: 24 - cagcagcacacugugguuugua - 45
• Deep sequencing: 19758 reads, 67 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-497

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).