miRBase entry: bta-mir-19b

Stem-loop bta-mir-19b


Accession
MI0005461
Description
Bos taurus bta-mir-19b precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
10 open access papers mention bta-mir-19b
(46 sentences)

Sequence

20630 reads, 326 reads per million, 76 experiments
cacuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagug
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))

Structure
     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 


Annotation confidence High
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Genome context
chr12: 66421815-66421901 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-19b

Accession MIMAT0004337
Description Bos taurus bta-miR-19b mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence experimental
cloned [2]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343