miRBase entry: bta-let-7c

Stem-loop bta-let-7c


Accession
MI0005454
Description
Bos taurus bta-let-7c precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
52 open access papers mention bta-let-7c
(234 sentences)

Sequence

243137 reads, 1399 reads per million, 76 experiments
gcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagc
((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))

Structure
  a      uU   G   U             ua  g ua  c 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
|| ||||||  ||| ||| |||||||||||||  || |  || c
cg agguuc  uuc auc uccaacaugucaa  uu a  gu  
  -      cu   g   u             --  g gg  c 


Annotation confidence High
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Genome context
chr1: 19984844-19984927 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-let-7c

Accession MIMAT0004332
Description Bos taurus bta-let-7c mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUGGUU - 32
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988