Stem-loop sequence bta-let-7a-3

Accession

MI0005452 (change log)

Description

Bos taurus let-7a-3 stem-loop

Gene family

MIPF0000002; let-7

Literature search

63 open access papers mention bta-let-7a-3
(271 sentences)

Stem-loop

      u   gu                ---------        
5' ggg gag  aguagguuguauaguu         uggggcu 
   ||| |||  ||||||||||||||||         |||||| c
3' ucc uuc  ucaucuaacauaucaa         gucccgu 
      u   ug                uaggguauc        

Deep sequencing

7464574 reads, 3.42e+04 reads per million, 78 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 117457806-117457879 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-let-7a-3

• bta-let-7a-3: chr5: 117457806-117457879 [+]
• bta-mir-2443: chr5: 117458061-117458133 [+]
• bta-let-7b: chr5: 117458606-117458686 [+]
• bta-mir-3596: chr5: 117458609-117458691 [-]

Database links

• EntrezGene:MIRLET7A-3
• RNAcentral:URS00004BC34C_9913
• miRBase Tracker:MI0005452

Mature sequence bta-let-7a-5p

• Accession: MIMAT0003844
• Previous IDs: bta-let-7a
• Sequence: 4 - ugagguaguagguuguauaguu - 25
• Deep sequencing: 22388600 reads, 78 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-let-7a-5p

Mature sequence bta-let-7a-3p

• Accession: MIMAT0004330
• Previous IDs: bta-let-7a*
• Sequence: 52 - cuauacaaucuacugucuuuc - 72
• Deep sequencing: 4600 reads, 74 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-let-7a-3p

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).