Stem-loop sequence bta-let-7a-2

Accession

MI0005451 (change log)

Description

Bos taurus let-7a-2 stem-loop

Gene family

MIPF0000002; let-7

Literature search

63 open access papers mention bta-let-7a-2
(270 sentences)

Stem-loop

      uu   g   u             uagaa ua a 
5' agg  gag uag agguuguauaguu     u  c u
   |||  ||| ||| |||||||||||||     |  | c
3' ucc  uuc auc uccgacaugucaa     a  g a
      -u   g   c             --uag gg a 

Deep sequencing

7464413 reads, 3.42e+04 reads per million, 78 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr15: 33533448-33533519 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000042260 ; bta-let-7a-2-201; exon 1

Clustered miRNAs

< 10kb from bta-let-7a-2

• bta-mir-100: chr15: 33539274-33539349 [-]
• bta-let-7a-2: chr15: 33533448-33533519 [-]

Database links

• EntrezGene:MIRLET7A-2
• RNAcentral:URS00003F0B88_9913
• miRBase Tracker:MI0005451

Mature sequence bta-let-7a-5p

• Accession: MIMAT0003844
• Previous IDs: bta-let-7a
• Sequence: 5 - ugagguaguagguuguauaguu - 26
• Deep sequencing: 22388600 reads, 78 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-let-7a-5p

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).