Stem-loop sequence ath-MIR866

Accession

MI0005443 (change log)

Description

Arabidopsis thaliana miR866 stem-loop

Literature search

1 open access papers mention ath-MIR866
(1 sentences)

Stem-loop

       -c   u               a              u             --cc   aag 
5' ucau  uau cuuacuuuucaagga cggauuuuguuaac aaaugauucacac    uug   a
   ||||  ||| ||||||||||||||| |||||||||||||| |||||||||||||    |||    
3' agug  aua gaaugagaaguuucu gccuaaaacaauug uuuacuaagugug    agc   a
       uu   u               -              c             cucu   aca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 16157823-16157948 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00002C13CF_3702
• miRBase Tracker:MI0005443

Mature sequence ath-miR866-5p

• Accession: MIMAT0004315
• Sequence: 18 - ucaaggaacggauuuuguuaa - 38
• Evidence: experimental; cloned [1]

Mature sequence ath-miR866-3p

• Accession: MIMAT0004316
• Sequence: 92 - acaaaauccgucuuugaaga - 111
• Evidence: experimental; cloned [1]

References

1. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).