Stem-loop sequence ath-MIR864

Accession

MI0005441 (change log)

Description

Arabidopsis thaliana miR864 stem-loop

Literature search

2 open access papers mention ath-MIR864
(2 sentences)

Stem-loop

         -     g        c     ----auaccuu      aua 
5' gcuuca gguau auugacuu aaaaa           gaaacu   a
   |||||| ||||| |||||||| |||||           ||||||   a
3' cgaagu ccaua uaacugaa uuuuu           cuuuga   c
         u     a        a     aguuuaaguuu      cuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 6740500-6740591 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00005AEE16_3702
• miRBase Tracker:MI0005441

Mature sequence ath-miR864-5p

• Accession: MIMAT0004311
• Sequence: 4 - ucagguaugauugacuucaaa - 24
• Evidence: experimental; cloned [1]

Mature sequence ath-miR864-3p

• Accession: MIMAT0004312
• Sequence: 70 - uaaagucaauaauaccuugaag - 91
• Evidence: experimental; cloned [1]

References

1. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).