miRBase entry: ath-MIR862

Stem-loop ath-MIR862


Accession
MI0005439
Description
Arabidopsis thaliana ath-MIR862 precursor miRNA
Gene family
MIPF0001145; MIR862

Literature search
1 open access papers mention ath-MIR862
(2 sentences)

Sequence

acaguaguuuUCCAAUAGGUCGAGCAUGUGCugaaacuguguguacagaguucucauaaacacacaguuucagcAUAUGCUGGAUCUACUUGAAGacuacugu
((((((((((((...((((((.((((((((((((((((((((((...((....))....)))))))))))))))))))))).))))))...))))))))))))

Structure
            CAA      G                      -aca  g 
acaguaguuuUC   UAGGUC AGCAUGUGCugaaacugugugu    ga u
||||||||||||   |||||| ||||||||||||||||||||||    ||  
ugucaucaGAAG   AUCUAG UCGUAUAcgacuuugacacaca    cu u
            UUC      G                      aaua  c 


Annotation confidence Not enough data
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Genome context
chr2: 10718096-10718198 [+]

Database links

Mature ath-miR862-5p

Accession MIMAT0004307
Description Arabidopsis thaliana ath-miR862-5p mature miRNA
Sequence 11 - UCCAAUAGGUCGAGCAUGUGC - 31
Evidence experimental
cloned [1], Illumina [2]

Mature ath-miR862-3p

Accession MIMAT0004308
Description Arabidopsis thaliana ath-miR862-3p mature miRNA
Sequence 75 - AUAUGCUGGAUCUACUUGAAG - 95
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219