Stem-loop ath-MIR858a

Accession

MI0005435

Description

Arabidopsis thaliana ath-MIR858a precursor miRNA

Gene family

MIPF0001138; MIR858

Literature search

5 open access papers mention ath-MIR858a
(11 sentences)

Sequence

cucaucuuugUUUCGUUGUCUGUUCGACCUUggucucgaucucuccucaaaacccuaauacgcgcuuuaucguuuauuucauucauccauccuucuuaugaucaucauaaacuaacguacaugguuuaucgguuuguuauugauggggauugggguagauagacgaucgaaacuuuugauuucugag
((((((...(((((((((((((((..(((((((((((.(((........(((((..((((.(((......))).))))((((...............)))).....((((((((.......)))))))).)))))......))).))))))))))).))))))))).))))))....))....))))

Structure

    ----  -uuu      -         CG           g   ucuccuca     cuaauacgcgcuuuaucguuuauuucauucauccauccuucuuaugaucauc        ac 
cuca    uc    gUUUCG UUGUCUGUU  ACCUUggucuc auc        aaacc                                                    auaaacua  g
||||    ||    |||||| |||||||||  ||||||||||| |||        |||||                                                    ||||||||  u
gagu    ag    caaagc agcagauag  ugggguuaggg uag        uuugg                                                    uauuuggu  a
    cuuu  uuuu      u         -a           g   --uuauug     ---------------------------------------------------c        ac 

Annotation confidence Not enough data

Genome context

chr1: 26773539-26773725 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR858a

Mature ath-miR858a

• Accession: MIMAT0004302
• Description: Arabidopsis thaliana ath-miR858a mature miRNA
• Sequence: 11 - UUUCGUUGUCUGUUCGACCUU - 31
• Evidence: experimental ; 454 [1], cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219