Stem-loop sequence ath-MIR858a

Accession

MI0005435 (change log)

Previous IDs

ath-MIR858

Description

Arabidopsis thaliana miR858 stem-loop

Gene family

MIPF0001138; MIR858

Literature search

5 open access papers mention ath-MIR858a
(11 sentences)

Stem-loop

       ----  -uuu      -         cg    ug     g   ucuccuca     cuaauacgcgcuuuaucguuuauuucauucauccauc 
5' cuca    uc    guuucg uugucuguu  accu  gucuc auc        aaacc                                     c
   ||||    ||    |||||| |||||||||  ||||  ||||| |||        |||||                                      
3' gagu    ag    caaagc agcagauag  uggg  uaggg uag        uuugg                                     u
       cuuu  uuuu      u         -a    gu     g   --uuauug     cuauuugguacaugcaaucaaauacuacuaguauucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 26773539-26773725 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR858a

• ath-MIR858a: chr1: 26773539-26773725 [-]
• ath-MIR858b: chr1: 26772633-26772935 [+]

Database links

• RNAcentral:URS00004EA924_3702
• miRBase Tracker:MI0005435

Mature sequence ath-miR858a

• Accession: MIMAT0004302
• Previous IDs: ath-miR858
• Sequence: 11 - uuucguugucuguucgaccuu - 31
• Evidence: experimental; 454 [1], cloned [1]

References

1. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).