Stem-loop sequence ath-MIR856

Accession

MI0005433 (change log)

Description

Arabidopsis thaliana miR856 stem-loop

Gene family

MIPF0001162; MIR856

Literature search

4 open access papers mention ath-MIR856
(13 sentences)

Stem-loop

         aaga           u  c    auc    c          g    auca       --     a  -    c        ga          gua  g     u    u   -a        u  auuuua    c 
5' auguau    ggugagacugu gg uuua   cuac aauaacuuca cugc    ugaagag  uagac ga gauu uggcgguu  ggguuucuuc   ga guuga cgau cuu  auguccug gg      aguu c
   ||||||    ||||||||||| || ||||   |||| |||||||||| ||||    |||||||  ||||| || |||| ||||||||  ||||||||||   || ||||| |||| |||  |||||||| ||      |||| c
3' uacgua    cuauuuugaca cc aaau   ggug uuauugaagu gacg    auuucuc  aucug cu cuaa aucgccga  uccaaagaag   cu uaacu gcua gaa  uacaggau uc      ucaa a
         ----           c  a    -au    u          a    ----       ua     g  a    c        -g          aac  g     u    -   ca        -  --guug    a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 11957460-11957730 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000040A7AE_3702
• miRBase Tracker:MI0005433

Mature sequence ath-miR856

• Accession: MIMAT0004300
• Sequence: 28 - uaauccuaccaauaacuucagc - 49
• Evidence: experimental; 454 [1], cloned [1]

References

1. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).