Stem-loop cbr-mir-235a

Accession

MI0005428

Description

Caenorhabditis briggsae cbr-mir-235a precursor miRNA

Gene family

MIPF0000367; mir-235

Sequence

uccgauccggccauggccaauugcauauauugcuuuuacuuuuucaaaaugcgaaUAUUGCACUUUCCCUGGCCAGAucuga
...((((.(((((.((..((.((((.(((((((((((........)))).)).))))))))).))..))))))).))))...

Structure

ucc    c     u  cc  u    u     -  -    acu 
   gauc ggcca gg  aa ugca auauu gc uuuu   u
   |||| ||||| ||  || |||| ||||| || ||||    
   cuAG CCGGU CC  UU ACGU UAUaa cg aaaa   u
agu    A     -  CU  C    -     g  u    cuu 

Annotation confidence Not enough data

Genome context

chrI: 10817705-10817786 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-235a

Mature cbr-miR-235a

• Accession: MIMAT0004295
• Description: Caenorhabditis briggsae cbr-miR-235a mature miRNA
• Sequence: 56 - UAUUGCACUUUCCCUGGCCAGA - 77
• Evidence: not_experimental

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207