miRBase entry: cbr-mir-790-2

Stem-loop cbr-mir-790-2


Accession
MI0005425
Description
Caenorhabditis briggsae cbr-mir-790-2 precursor miRNA
Gene family
MIPF0000362; mir-790


Sequence

gacugCUUGGCACUCGCGAACACCGCGgucgaaguuacucgcggaguuagccagugucaaccagaug
..(((.((((((((.((.(((.(((((((.......)).))))).))).)).)))))))).)))...

Structure
-ga   C        C  G   A     -  cg 
   cug UUGGCACU GC AAC CCGCG gu  a
   ||| |||||||| || ||| ||||| ||  a
   gac aacuguga cg uug ggcgc ca  g
gua   c        c  a   a     u  uu 


Annotation confidence Not enough data
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Genome context
chrIV: 6048230-6048296 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbr-mir-790-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-790

Accession MIMAT0004292
Description Caenorhabditis briggsae cbr-miR-790 mature miRNA
Sequence 6 - CUUGGCACUCGCGAACACCGCG - 27
Evidence not_experimental

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207